HMRC MTD Letters Issued in Error
Have you received a letter from HMRC about missing the first MTD quarterly update?
As Making Tax Digital (MTD) for Income Tax continues to roll out, many taxpayers are becoming familiar with new obligations around digital record-keeping and quarterly reporting. However, recent reports have caused confusion and concern amongst some taxpayers who have received letters from HMRC claiming they have failed to submit their first quarterly update.

The problem? In many cases, the quarterly update was submitted correctly, but HMRC’s systems have not recorded or updated the submission status accurately.
What Is Happening?
A growing number of taxpayers registered for Making Tax Digital have received correspondence from HMRC suggesting they missed their first quarterly submission deadline.
Naturally, receiving a letter from HMRC can be worrying, particularly when it implies that compliance obligations have not been met. However, tax professionals and software providers have identified that many of these letters appear to have been issued in error.
The issue seems to stem from delays or failures within HMRC’s internal systems, which are not always correctly synchronising data received from approved MTD software platforms.
As a result, taxpayers who have filed on time may still receive automated reminders or warning letters indicating that their submission is outstanding.
Why Has This Happened?
Making Tax Digital is one of the most significant changes to the UK tax system in recent decades. While the objectives of increasing efficiency and reducing errors are widely supported, the transition relies heavily on complex digital infrastructure.
As with any large-scale digital transformation project, occasional system issues are inevitable.
Current reports suggest that some quarterly submissions have been successfully submitted through MTD-compatible software, but have not been correctly reflected within HMRC’s records. This creates a discrepancy between the information held by software providers and the information displayed on HMRC’s systems.
Unfortunately, automated compliance letters are then generated based on HMRC’s records, regardless of whether the taxpayer has already fulfilled their obligations.
What Should Taxpayers Do?
If you have received a letter claiming that you missed a quarterly update, the first step is not to panic.
Before taking any action, check:
- Your MTD software submission history.
- Confirmation receipts or submission acknowledgements.
- Any communications from your accountant or tax adviser confirming that the update was filed.
- Relevant submission dates and reference numbers.
If records show that the quarterly update was successfully submitted, the letter may simply be the result of HMRC’s reporting issue rather than any fault on your part.
Should You Contact HMRC?
In many cases, it may be sensible to speak with your accountant before contacting HMRC directly.
An experienced tax adviser can:
- Verify whether the submission was successfully transmitted.
- Review submission confirmations.
- Determine whether corrective action is required.
- Contact HMRC on your behalf where necessary.
Keeping copies of all submission receipts and correspondence is particularly important while the MTD system continues to evolve.
What If You Actually Missed the Deadline?
While some letters appear to have been issued incorrectly, taxpayers should not assume this is always the case.
If a quarterly update has genuinely been missed, action should be taken as soon as possible to bring records up to date and minimise the risk of future compliance issues.
Your accountant can help identify any outstanding obligations and advise on the appropriate next steps.
The Importance of Professional Support
The rollout of Making Tax Digital represents a major shift in how individuals and businesses interact with HMRC. Whilst digital reporting offers many benefits, occasional administrative and system issues can create unnecessary uncertainty.
Receiving a compliance letter does not automatically mean you have done anything wrong.
Professional advice can help clarify your position, ensure records are accurate, and provide reassurance when HMRC’s systems and taxpayer records do not appear to agree.
How Folkes Worton Can Help
At FWCA, we are closely monitoring developments surrounding Making Tax Digital and supporting clients through the transition. If you have received a letter from HMRC regarding a missed quarterly update, we can review your submissions, check your compliance position, and liaise with HMRC where appropriate.
If you’re unsure whether a notification is accurate, speaking to a member of our team can provide clarity and peace of mind. Call us on 01384 376 964.
Need support with Making Tax Digital? Contact FWCA today for expert advice and practical guidance on staying compliant with HMRC’s evolving reporting requirements.
Folkes Worton LLP Chartered Accountants
Accounting for the Future